AbundanceCurve-class - S4 class defining a clonal abundance curve

Description

AbundanceCurve defines clonal abundance values.

Usage

"print"(x)
"plot"(x, y, ...)

Arguments

x
AbundanceCurve object
y
ignored.
arguments to pass to plotDiversityCurve.

Slots

data
data.frame with relative clonal abundance data and confidence intervals, containing the following columns:
  • GROUP: group identifier.
  • CLONE: clone identifier.
  • P: relative abundance of the clone.
  • LOWER: lower confidence inverval bound.
  • UPPER: upper confidence interval bound.
  • RANK: the rank of the clone abundance.
groups
character vector of group values.
n
numeric vector indication the number of sequences in each group.
nboot
number of bootstrap realizations performed.
ci
confidence interval defining the upper and lower bounds (a value between 0 and 1).