• Immcantation Portal - Overview of the Immcantation framework tools. Tutorials to analyze immune repertoires.
  • pRESTO - Raw read assembly, quality control and UMI processing
  • Change-O - V(D)J alignment standardization and clonal clustering
  • Alakazam - V(D)J gene usage, repertoire diversity and physicochemical property analysis.
  • SHazaM - Mutation profiling and selection strength quantification physicochemical property analysis
  • TIgGER - Polymorphism detection and genotyping
  • SCOPer - Spectral clustering of B cells into clonal lineages.
  • Dowser - Lineage reconstruction and analysis.