translateDNA - Translate nucleotide sequences to amino acids
Description¶
translateDNA
translates nucleotide sequences to amino acid sequences.
Usage¶
translateDNA(seq, trim = FALSE)
Arguments¶
- seq
- vector of strings defining DNA sequence(s) to be converted to translated.
- trim
- boolean flag to remove 3 nts from both ends of seq (converts IMGT junction to CDR3 region).
Value¶
A vector of translated sequence strings.
Examples¶
# Translate a single sequence
translateDNA("ACTGACTCGA")
[1] "TDS"
# Translate a vector of sequences
translateDNA(ExampleDb$junction[1:3])
[1] "CARVKRRGWRRNSLWFGESTPSDAHRWFDPW" "CARMVILGSCYSRGCGTPGPGDGETQYW" "CARVGIDVVVPAAIPGFDYYYGMDVW"
# Remove the first and last codon from the translation
translateDNA(ExampleDb$junction[1:3], trim=TRUE)
[1] "ARVKRRGWRRNSLWFGESTPSDAHRWFDP" "ARMVILGSCYSRGCGTPGPGDGETQY" "ARVGIDVVVPAAIPGFDYYYGMDV"
See also¶
[translate](http://www.rdocumentation.org/packages/seqinr/topics/translate)
.